High Performance & Scientific Computing
Available Software
Introduction
The Secure Enclave has an extensive library of software available for your use. To learn more about a specific package, follow the links below. To request a software package be installed contact the OIT Help Desk (see https://help.utk.edu/). Please see the output of the “module avail” command for a more complete set of software installed either on the Open Enclave or Secure Enclave resources.
- AMET
- ATLAS
- BSG
- CAMX
- CHEMPS2
- DIAMORSE
- DICE
- GD
- ISIS
- MACS2
- MCIP
- MYSQL
- ORTHOFINDER
- REVBAYES
- SRATOOLKIT
- SU2
- VTK
- WGRIB
- WRF-CHEM
- WRF-WPS
- ABINIT
- ACF-LICENSE-MAN
- AFNI
- ALIPHYSICS
- ALIROOT
- ANACONDA2
- ANACONDA3
- ANT
- ARMADILLO
- ARPACK-NG
- ASTRA-TOOLBOX
- AUGUSTUS
- AUTOMAKE
- BANDUP
- BBCP
- BEDTOOLS
- BIOPYTHON
- BLAST
- BOOST
- BOWTIE2
- BUSCO
- BWA
- BX-PYTHON
- BZIP2
- CAFFE
- CAFFE2
- CANU
- CMAKE
- CMAQ
- CMAQ2CAMX
- COGSOFT
- COPASI
- CWORLD-DEKKER
- DAAL
- DAKOTA
- DASK
- DEEPTOOLS
- DIAMOND
- DMTCP
- DOS2UNIX
- DPLASMA
- EIGEN
- ELSA
- EMACS
- EPACTS
- ESPRESSO
- ESPRESSOMD
- FASTME
- FASTQC
- FASTTREE
- FERAM
- FFMPEG
- FFTW
- FLEX
- GAP2SEQ
- GEANT4
- GET_HOMOLOGUES_EST
- GIT
- GLOG
- GLPK
- GMP
- GNUPARALLEL
- GNUPLOT
- GO
- GOPENMOL
- GPFLOWOPT
- GRACE
- GRAPHVIZ
- GROCSVS
- GROFF
- GROMACS
- GSL
- GSTREAMER
- GTDBTK
- GTK-DOC
- GUROBI
- HADOOP
- HDF5
- HDF5-PARALLEL
- HIC-PRO
- HIGLASS
- HMMER
- HPC-BLAST
- HTSEQ
- HTSLIB
- HUMANN2
- HWLOC
- HYPRE
- ICED
- IDBA
- IMAGEIO
- IMAGEMAGICK
- IMBALANCED-LEARN
- IOAPI
- IPM
- IQ-TREE
- ITSTOOL
- JAVA
- JELLYFISH
- JULIA
- KERAS
- KERAS-TCN
- KNEADDATA
- LADSPA_SDK
- LAMMPS
- LAPACK
- LEFSE
- LEPTONICA
- LIBGD
- LIBIEC61883
- LIBTIFF
- LIBXLS
- LIFELINES
- LIGGGHTS
- LISENSE
- LLVM
- LUSCUS
- MAFFT
- MATPLOTLIB
- MAVEN
- MCL
- MEGAN
- MERCURIAL
- MESA
- METIS
- MLXTEND
- MOLCAS
- MOLDEN
- MONGODB
- MONGODB-COMPASS
- MONO
- MOTHUR
- MPC
- MPFR
- MPICH
- MUMMER
- MUSCLE
- MXML
- NAMD
- NCBI-VDB
- NCO
- NCVIEW
- NEPER
- NETCDF
- NEXTFLOW
- NGS
- NLOPT
- NMAP
- NUMPY
- NWCHEM
- OCAML
- OPAM
- OPENBLAS
- OPENDIEL
- OPENBABEL
- OPENCV
- OPENFOAM
- OPENMPI
- P4VASP
- PAIRIX
- PAIRSAMTOOLS
- PANDOC
- PAPI
- PARAVIEW
- PARMETIS
- PBGZIP
- PCRE
- PDFTK
- PERL
- PHYML
- PLANETOCOSMICS
- PLASMA
- PLOTICUS
- POSTGIS
- POSTGRESQL
- POVRAY
- PRODIGAL
- PROKKA
- PROTTEST
- PSI4
- PYCGNS
- PYGRAPHVIZ
- PYMONGO
- PYQTGRAPH
- PYSAM
- PYSCF
- PYTHIA
- PYTHON
- PYTHON3
- Q-ESPRESSO
- QCMAQUIS
- QIIME2
- QMCPACK
- R
- RAXML
- ROOT
- RSTUDIO
- RUBY
- SAMTOOLS
- SBT
- SCALA
- SCALAPACK
- SCIKIT-IMAGE
- SCIKIT-LEARN
- SCONS
- SIESTA
- SILO
- SINGULARITY_R_STUDIO
- SKEWER
- SKREBATE
- SMOKE
- SPADES
- SPARK
- SPDLOG
- SPRNG
- ST2
- STACKS
- STAR
- STATA
- STATSMODELS
- SUBVERSION
- SWIG
- SZIP
- TENSORFLOW
- TENSORFLOW-GPU
- TESSERACT
- TEXINFO
- TEXLIVE
- THEANO
- TIFFFILE
- TOPHAT
- TRANSDECODER
- TRANSRATE
- TRIMMOMATIC
- TRINITY
- TURBOMOLE
- UDUNITS
- USEARCH
- UTF8PROC
- VALGRIND
- VASP
- VMD
- VSEARCH
- XALT
- XGBOOST
- XML2
- XPDF
- XZ
- ZEPPELIN
- ZLIB